NanoVer
Contents:
Highlights
Installation & Getting Started
Tutorials
Concepts
Modules
How to Cite NanoVer
NanoVer
Index
Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
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Y
A
active_interactions (nanover.imd.imd_state.ImdStateWrapper property)
add_ase_box_vectors_to_frame_data() (in module nanover.ase.converter)
add_ase_positions_to_frame_data() (in module nanover.ase.converter)
add_ase_state_to_frame_data() (in module nanover.ase.converter)
add_ase_topology_to_frame_data() (in module nanover.ase.converter)
add_callback() (nanover.utilities.event.Event method)
add_CommandServicer_to_server() (in module nanover.protocol.command.command_service_pb2_grpc)
add_frame_data_positions_to_ase() (in module nanover.ase.converter)
add_frame_data_topology_to_ase() (in module nanover.ase.converter)
add_frame_positions_to_mda() (in module nanover.mdanalysis.converter)
add_frame_topology_to_mda() (in module nanover.mdanalysis.converter)
add_imd_force_to_system() (in module nanover.openmm.imd)
add_mda_positions_to_frame_data() (in module nanover.mdanalysis.converter)
add_mda_topology_to_frame_data() (in module nanover.mdanalysis.converter)
add_multiuser_commands() (in module nanover.app.multiuser)
add_openmm_state_to_frame_data() (in module nanover.openmm.converter)
add_openmm_topology_to_frame_data() (in module nanover.openmm.converter)
add_particles() (nanover.app.selection.RenderingSelection method)
add_service() (nanover.app.app_server.NanoverApplicationServer method)
(nanover.core.grpc_server.GrpcServer method)
(nanover.essd.servicehub.ServiceHub method)
add_simulation() (nanover.omni.omni.OmniRunner method)
add_StateServicer_to_server() (in module nanover.protocol.state.state_service_pb2_grpc)
add_to_frame_data() (nanover.openmm.imd.ImdForceManager method)
add_TrajectoryServiceServicer_to_server() (in module nanover.protocol.trajectory.trajectory_service_pb2_grpc)
address (nanover.app.app_server.NanoverApplicationServer property)
(nanover.app.runner.NanoverRunner property)
(nanover.ase.imd.NanoverASEDynamics property)
(nanover.ase.openmm.runner.ImdParams attribute)
(nanover.core.grpc_server.GrpcServer property)
(nanover.essd.servicehub.ServiceHub property)
address_and_port (nanover.core.grpc_server.GrpcServer property)
adjust_forces() (nanover.ase.wall_constraint.VelocityWallConstraint method)
adjust_momenta() (nanover.ase.wall_constraint.VelocityWallConstraint method)
adjust_positions() (nanover.ase.wall_constraint.VelocityWallConstraint method)
advance_by_one_step() (nanover.omni.ase_omm.ASEOpenMMSimulation method)
(nanover.omni.omni.Simulation method)
(nanover.omni.openmm.OpenMMSimulation method)
(nanover.omni.playback.PlaybackSimulation method)
advance_by_seconds() (nanover.omni.ase_omm.ASEOpenMMSimulation method)
(nanover.omni.omni.Simulation method)
(nanover.omni.openmm.OpenMMSimulation method)
(nanover.omni.playback.PlaybackSimulation method)
advance_to_first_coordinate_frame() (in module nanover.recording.reading)
advance_to_first_particle_frame() (in module nanover.recording.reading)
advance_to_next_entry() (nanover.omni.playback.PlaybackSimulation method)
advance_to_next_report() (nanover.omni.ase_omm.ASEOpenMMSimulation method)
(nanover.omni.openmm.OpenMMSimulation method)
all_frames (nanover.app.client.NanoverImdClient property)
app_server (nanover.app.runner.NanoverRunner property)
(nanover.ase.openmm.runner.ASEOpenMMRunner property)
(nanover.omni.omni.OmniRunner property)
(nanover.openmm.runner.OpenMMRunner property)
apply_single_interaction_force() (in module nanover.imd.imd_force)
are_frames_subscribed (nanover.app.client.NanoverImdClient property)
arguments (nanover.command.command_info.CommandInfo property)
array_keys (nanover.trajectory.frame_data.FrameData property)
ArraysView (class in nanover.trajectory.frame_data)
ase_to_frame_data() (in module nanover.ase.converter)
ASEOpenMMRunner (class in nanover.ase.openmm.runner)
ASEOpenMMSimulation (class in nanover.omni.ase_omm)
assert_equal_soon() (in module nanover.testing.asserts)
assert_in_soon() (in module nanover.testing.asserts)
assert_not_in_soon() (in module nanover.testing.asserts)
atoms (nanover.ase.imd.NanoverASEDynamics property)
(nanover.ase.trajectory_logger.TrajectoryLogger attribute)
attempt_update_locks() (nanover.core.nanover_client.NanoverClient method)
attempt_update_multiplayer_locks() (nanover.app.client.NanoverImdClient method)
attempt_update_multiplayer_state() (nanover.app.client.NanoverImdClient method)
attempt_update_state() (nanover.core.nanover_client.NanoverClient method)
attribute (nanover.mdanalysis.universe.KeyConversion attribute)
autoconnect() (nanover.app.client.NanoverImdClient class method)
available_commands (nanover.core.nanover_client.NanoverClient property)
B
base_path (nanover.ase.trajectory_logger.TrajectoryLogger attribute)
base_trajectory_path (nanover.ase.openmm.runner.TrajectoryLoggerInfo property)
basic_imd() (nanover.ase.imd.NanoverASEDynamics class method)
basic_server() (nanover.app.app_server.NanoverApplicationServer class method)
batched() (in module nanover.mdanalysis.universe)
bond_orders (nanover.trajectory.frame_data.FrameData property)
bond_pairs (nanover.trajectory.frame_data.FrameData property)
box_vectors (nanover.trajectory.frame_data.FrameData property)
C
calculate() (nanover.ase.imd_calculator.ImdCalculator method)
(nanover.ase.null_calculator.NullCalculator method)
(nanover.ase.openmm.calculator.OpenMMCalculator method)
calculate_constant_force() (in module nanover.imd.imd_force)
calculate_gaussian_force() (in module nanover.imd.imd_force)
calculate_imd_force() (in module nanover.imd.imd_force)
calculate_spring_force() (in module nanover.imd.imd_force)
calculator (nanover.ase.imd_calculator.ImdCalculator property)
callback (nanover.command.command_service.CommandRegistration attribute)
cancel_run() (nanover.ase.imd.NanoverASEDynamics method)
(nanover.openmm.runner.OpenMMRunner method)
cell (nanover.omni.ase_omm.InitialState attribute)
chain_count (nanover.trajectory.frame_data.FrameData property)
chain_names (nanover.trajectory.frame_data.FrameData property)
channel (nanover.core.grpc_client.GrpcClient attribute)
clear_particles() (nanover.app.selection.RenderingSelection method)
clear_selections() (nanover.app.client.NanoverImdClient method)
close() (nanover.app.app_server.NanoverApplicationServer method)
(nanover.app.app_server.SupportsClose method)
(nanover.app.client.NanoverImdClient method)
(nanover.app.frame_app.NanoverFrameApplication method)
(nanover.app.runner.NanoverRunner method)
(nanover.ase.imd.NanoverASEDynamics method)
(nanover.ase.openmm.runner.ASEOpenMMRunner method)
(nanover.ase.openmm.runner.TrajectoryLoggerInfo method)
(nanover.ase.trajectory_logger.TrajectoryLogger method)
(nanover.core.grpc_client.GrpcClient method)
(nanover.core.grpc_server.GrpcServer method)
(nanover.core.nanover_client.NanoverClient method)
(nanover.core.nanover_server.NanoverServer method)
(nanover.essd.client.DiscoveryClient method)
(nanover.essd.server.DiscoveryServer method)
(nanover.imd.imd_client.ImdClient method)
(nanover.lammps.LammpsImd.LammpsImd method)
(nanover.omni.omni.OmniRunner method)
(nanover.openmm.runner.OpenMMRunner method)
(nanover.state.state_service.StateService method)
(nanover.trajectory.frame_publisher.FramePublisher method)
(nanover.trajectory.frame_server.FrameServer method)
Command (class in nanover.protocol.command.command_service_pb2_grpc)
CommandInfo (class in nanover.command.command_info)
CommandMessage (class in nanover.protocol.command.command_service_pb2)
CommandRegistration (class in nanover.command.command_service)
CommandReply (class in nanover.protocol.command.command_service_pb2)
commands (nanover.command.command_service.CommandService property)
(nanover.core.nanover_server.NanoverServer property)
CommandService (class in nanover.command.command_service)
CommandServicer (class in nanover.protocol.command.command_service_pb2_grpc)
CommandStub (class in nanover.protocol.command.command_service_pb2_grpc)
configure_reusable_socket() (in module nanover.essd.server)
connect() (nanover.app.client.NanoverImdClient method)
connect_imd() (nanover.app.client.NanoverImdClient method)
connect_multiplayer() (nanover.app.client.NanoverImdClient method)
connect_to_single_server() (nanover.app.client.NanoverImdClient class method)
connect_to_single_server_multiple_ports() (nanover.app.client.NanoverImdClient class method)
connect_trajectory() (nanover.app.client.NanoverImdClient method)
content_updated (nanover.state.state_dictionary.StateDictionary attribute)
conversion (nanover.mdanalysis.universe.KeyConversion attribute)
converter (nanover.mdanalysis.converter.FrameDataFieldConversion attribute)
copy() (nanover.trajectory.frame_data.FrameData method)
copy_content() (nanover.state.state_dictionary.StateDictionary method)
(nanover.utilities.change_buffers.DictionaryChangeMultiView method)
copy_state() (nanover.core.nanover_client.NanoverClient method)
(nanover.core.nanover_server.NanoverServer method)
(nanover.state.state_service.StateService method)
create_imd_force() (in module nanover.openmm.imd)
create_selection() (nanover.app.client.NanoverImdClient method)
create_view() (nanover.utilities.change_buffers.DictionaryChangeMultiView method)
current_frame (nanover.app.client.NanoverImdClient property)
D
deep_copy_serializable_dict() (in module nanover.utilities.protobuf_utilities)
DEFAULT_CONNECTION_PORT (nanover.core.grpc_client.GrpcClient attribute)
DEFAULT_SERVER_NAME (nanover.app.app_server.NanoverApplicationServer attribute)
(nanover.app.frame_app.NanoverFrameApplication attribute)
(nanover.app.imd_app.NanoverImdApplication attribute)
delete() (nanover.trajectory.frame_data.RecordView method)
(nanover.utilities.key_lockable_map.KeyLockableMap method)
describeNextReport() (nanover.openmm.imd.NanoverImdReporter method)
(nanover.openmm.nanoverreporter.NanoverReporter method)
DESCRIPTOR (nanover.protocol.array_pb2.FloatArray attribute)
(nanover.protocol.array_pb2.IndexArray attribute)
(nanover.protocol.array_pb2.StringArray attribute)
(nanover.protocol.array_pb2.ValueArray attribute)
(nanover.protocol.command.command_service_pb2.CommandMessage attribute)
(nanover.protocol.command.command_service_pb2.CommandReply attribute)
(nanover.protocol.command.command_service_pb2.GetCommandsReply attribute)
(nanover.protocol.command.command_service_pb2.GetCommandsRequest attribute)
(nanover.protocol.state.state_service_pb2.StateUpdate attribute)
(nanover.protocol.state.state_service_pb2.SubscribeStateUpdatesRequest attribute)
(nanover.protocol.state.state_service_pb2.UpdateLocksRequest attribute)
(nanover.protocol.state.state_service_pb2.UpdateLocksResponse attribute)
(nanover.protocol.state.state_service_pb2.UpdateStateRequest attribute)
(nanover.protocol.state.state_service_pb2.UpdateStateResponse attribute)
(nanover.protocol.trajectory.frame_pb2.FrameData attribute)
(nanover.protocol.trajectory.frame_pb2.FrameData.ArraysEntry attribute)
(nanover.protocol.trajectory.frame_pb2.FrameData.ValuesEntry attribute)
(nanover.protocol.trajectory.get_frame_pb2.GetFrameRequest attribute)
(nanover.protocol.trajectory.get_frame_pb2.GetFrameResponse attribute)
deserialize_simulation() (in module nanover.openmm.serializer)
dict_to_interaction() (in module nanover.imd.imd_state)
dict_to_struct() (in module nanover.utilities.protobuf_utilities)
dictionary_change_to_state_update() (in module nanover.state.state_service)
DictionaryChange (class in nanover.utilities.change_buffers)
DictionaryChangeBuffer (class in nanover.utilities.change_buffers)
DictionaryChangeMultiView (class in nanover.utilities.change_buffers)
DictOfQueues (class in nanover.utilities.request_queues)
discovery (nanover.app.app_server.NanoverApplicationServer property)
(nanover.ase.openmm.runner.ImdParams attribute)
discovery_port (nanover.ase.openmm.runner.ASEOpenMMRunner property)
(nanover.ase.openmm.runner.ImdParams attribute)
DiscoveryClient (class in nanover.essd.client)
DiscoveryServer (class in nanover.essd.server)
dynamics (nanover.ase.imd.NanoverASEDynamics attribute)
(nanover.ase.openmm.runner.ASEOpenMMRunner property)
dynamics_interval (nanover.ase.imd.NanoverASEDynamics property)
(nanover.ase.openmm.runner.ASEOpenMMRunner property)
(nanover.openmm.runner.OpenMMRunner property)
E
emit() (nanover.omni.playback.PlaybackSimulation method)
Event (class in nanover.utilities.event)
explosion_mask() (in module nanover.mdanalysis.universe)
extract_atom() (nanover.lammps.mock.MockLammps method)
extract_global() (nanover.lammps.mock.MockLammps method)
F
fill_empty_fields() (in module nanover.nglview.nglclient)
find_unit_type() (nanover.lammps.LammpsImd.LammpsImd method)
first_frame (nanover.app.client.NanoverImdClient property)
FloatArray (class in nanover.protocol.array_pb2)
flush_changed_blocking() (nanover.utilities.change_buffers.DictionaryChangeBuffer method)
flush_changes() (nanover.app.selection.RenderingSelection method)
force_interval (nanover.openmm.imd.NanoverImdReporter attribute)
(nanover.openmm.runner.OpenMMRunner property)
ForceCalculator (class in nanover.imd.imd_force)
forces (nanover.lammps.conversions.LammpsUnitConverter attribute)
format (nanover.ase.trajectory_logger.TrajectoryLogger attribute)
frame_count (nanover.trajectory.frame_server.FrameServer property)
frame_data_to_ase() (in module nanover.ase.converter)
frame_data_to_mdanalysis() (in module nanover.mdanalysis.converter)
frame_data_to_nglwidget() (in module nanover.nglview.nglclient)
frame_data_to_pdb() (in module nanover.nglview.nglclient)
frame_index (nanover.ase.trajectory_logger.TrajectoryLogger attribute)
frame_interval (nanover.ase.openmm.runner.ASEOpenMMRunner property)
(nanover.ase.openmm.runner.ImdParams attribute)
(nanover.openmm.imd.NanoverImdReporter attribute)
(nanover.openmm.runner.OpenMMRunner property)
frame_publisher (nanover.app.frame_app.NanoverFrameApplication property)
(nanover.openmm.imd.NanoverImdReporter attribute)
frame_queues (nanover.trajectory.frame_publisher.FramePublisher attribute)
FrameClient (class in nanover.trajectory.frame_client)
FrameData (class in nanover.protocol.trajectory.frame_pb2)
(class in nanover.trajectory.frame_data)
FrameData.ArraysEntry (class in nanover.protocol.trajectory.frame_pb2)
FrameData.ValuesEntry (class in nanover.protocol.trajectory.frame_pb2)
FrameDataField (class in nanover.mdanalysis.converter)
FrameDataFieldConversion (class in nanover.mdanalysis.converter)
FrameDataStructure (class in nanover.nglview.nglclient)
FramePublisher (class in nanover.trajectory.frame_publisher)
frames (nanover.app.client.NanoverImdClient property)
FrameServer (class in nanover.trajectory.frame_server)
freeze() (nanover.state.state_dictionary.StateDictionary method)
(nanover.utilities.change_buffers.DictionaryChangeBuffer method)
(nanover.utilities.change_buffers.DictionaryChangeMultiView method)
from_dictionary() (nanover.app.selection.RenderingSelection class method)
from_json() (nanover.essd.servicehub.ServiceHub class method)
from_paths() (nanover.omni.playback.PlaybackSimulation class method)
from_proto() (nanover.command.command_info.CommandInfo class method)
from_simulation() (nanover.omni.ase_omm.ASEOpenMMSimulation class method)
(nanover.omni.openmm.OpenMMSimulation class method)
from_xml() (nanover.ase.openmm.calculator.OpenMMCalculator class method)
(nanover.ase.openmm.runner.ASEOpenMMRunner class method)
from_xml_input() (nanover.openmm.runner.OpenMMRunner class method)
from_xml_inputs() (nanover.openmm.runner.OpenMMRunner class method)
from_xml_path() (nanover.omni.ase_omm.ASEOpenMMSimulation class method)
(nanover.omni.openmm.OpenMMSimulation class method)
from_xmls() (nanover.ase.openmm.runner.ASEOpenMMRunner class method)
G
gather_atoms() (nanover.lammps.mock.MockLammps method)
generate_atoms() (nanover.ase.openmm.calculator.OpenMMCalculator method)
generate_bonds_from_ase() (in module nanover.ase.converter)
get() (nanover.trajectory.frame_data.RecordView method)
(nanover.utilities.key_lockable_map.KeyLockableMap method)
(nanover.utilities.request_queues.SingleItemQueue method)
get_all() (nanover.utilities.key_lockable_map.KeyLockableMap method)
get_all_paths() (in module nanover.omni.cli)
get_broadcast_addresses() (in module nanover.essd.utils)
get_broadcast_addresses_for_service() (nanover.essd.server.DiscoveryServer method)
get_broadcastable_ip() (in module nanover.essd.utils)
get_center_of_mass_subset() (in module nanover.imd.imd_force)
get_change_buffer() (nanover.state.state_dictionary.StateDictionary method)
(nanover.state.state_service.StateService method)
get_imd_forces_from_system() (in module nanover.openmm.imd)
get_ipv4_addresses() (in module nanover.essd.utils)
get_natoms() (nanover.lammps.mock.MockLammps method)
get_nested_or_default() (in module nanover.app.selection)
get_periodic_box_lengths() (in module nanover.ase.imd_calculator)
get_radius_of_element() (in module nanover.ase.converter)
get_requested_port_or_default() (in module nanover.core.grpc_server)
get_selection() (nanover.app.client.NanoverImdClient method)
get_service_address() (nanover.essd.servicehub.ServiceHub method)
get_shared_value() (nanover.app.client.NanoverImdClient method)
get_sparse_forces() (in module nanover.openmm.imd)
get_structure_string() (nanover.nglview.nglclient.FrameDataStructure method)
GetCommands() (nanover.command.command_service.CommandService method)
(nanover.protocol.command.command_service_pb2_grpc.Command static method)
(nanover.protocol.command.command_service_pb2_grpc.CommandServicer method)
GetCommandsReply (class in nanover.protocol.command.command_service_pb2)
GetCommandsRequest (class in nanover.protocol.command.command_service_pb2)
GetFrameRequest (class in nanover.protocol.trajectory.get_frame_pb2)
GetFrameResponse (class in nanover.protocol.trajectory.get_frame_pb2)
GetFrameResponseAggregatingQueue (class in nanover.utilities.request_queues)
GrpcClient (class in nanover.core.grpc_client)
GrpcServer (class in nanover.core.grpc_server)
H
handle_signals() (nanover.omni.omni.InternalRunner method)
handle_user_arguments() (in module nanover.essd.list_cli)
(in module nanover.omni.cli)
has_topology() (in module nanover.mdanalysis.universe)
hide (nanover.app.selection.RenderingSelection property)
I
id (nanover.essd.servicehub.ServiceHub property)
imd (nanover.app.imd_app.NanoverImdApplication property)
imd_calculator (nanover.ase.imd.NanoverASEDynamics attribute)
imd_force (nanover.openmm.imd.NanoverImdReporter attribute)
imd_state (nanover.imd.imd_server.ImdServer property)
ImdCalculator (class in nanover.ase.imd_calculator)
ImdClient (class in nanover.imd.imd_client)
ImdForceManager (class in nanover.openmm.imd)
ImdParams (class in nanover.ase.openmm.runner)
ImdServer (class in nanover.imd.imd_server)
ImdStateWrapper (class in nanover.imd.imd_state)
implemented_properties (nanover.ase.openmm.calculator.OpenMMCalculator attribute)
include_energies (nanover.openmm.imd.NextReport attribute)
include_forces (nanover.openmm.imd.NanoverImdReporter attribute)
(nanover.openmm.imd.NextReport attribute)
(nanover.openmm.runner.OpenMMRunner property)
include_positions (nanover.openmm.imd.NextReport attribute)
include_velocities (nanover.openmm.imd.NanoverImdReporter attribute)
(nanover.openmm.imd.NextReport attribute)
(nanover.openmm.runner.OpenMMRunner property)
IndexArray (class in nanover.protocol.array_pb2)
info (nanover.command.command_service.CommandRegistration attribute)
initialise_runner() (in module nanover.omni.cli)
InitialState (class in nanover.omni.ase_omm)
insecure_channel() (nanover.core.grpc_client.GrpcClient class method)
insert_interaction() (nanover.imd.imd_state.ImdStateWrapper method)
interaction_method (nanover.app.selection.RenderingSelection property)
interaction_to_dict() (in module nanover.imd.imd_state)
interaction_type (nanover.imd.particle_interaction.ParticleInteraction property)
interactions (nanover.app.client.NanoverImdClient property)
(nanover.ase.imd_calculator.ImdCalculator property)
(nanover.imd.imd_client.ImdClient property)
(nanover.lammps.LammpsImd.LammpsImd property)
internal_calculator (nanover.ase.imd.NanoverASEDynamics property)
InternalRunner (class in nanover.omni.omni)
interval (nanover.utilities.timing.VariableIntervalGenerator property)
InvalidMagicNumber
invoke() (nanover.utilities.event.Event method)
is_broadcasting (nanover.essd.server.DiscoveryServer property)
is_channel_owner (nanover.core.grpc_client.GrpcClient property)
is_in_network() (in module nanover.essd.utils)
is_paused (nanover.omni.omni.OmniRunner property)
is_running (nanover.app.runner.NanoverRunner property)
(nanover.ase.imd.NanoverASEDynamics property)
(nanover.ase.openmm.runner.ASEOpenMMRunner property)
(nanover.openmm.runner.OpenMMRunner property)
iter_queues() (nanover.utilities.request_queues.DictOfQueues method)
iter_queues_items() (nanover.utilities.request_queues.DictOfQueues method)
iter_recording_buffers() (in module nanover.recording.reading)
iter_recording_entries() (in module nanover.recording.reading)
iter_recording_files() (in module nanover.recording.reading)
iter_state_file() (in module nanover.recording.reading)
iter_state_recording() (in module nanover.recording.reading)
iter_trajectory_file() (in module nanover.recording.reading)
iter_trajectory_recording() (in module nanover.recording.reading)
iter_trajectory_with_elapsed_integrated() (in module nanover.recording.reading)
K
key (nanover.mdanalysis.converter.FrameDataField attribute)
(nanover.mdanalysis.converter.FrameDataFieldConversion attribute)
KeyConversion (class in nanover.mdanalysis.universe)
KeyLockableMap (class in nanover.utilities.key_lockable_map)
keys() (nanover.trajectory.frame_data.RecordView method)
kinetic_energy (nanover.trajectory.frame_data.FrameData property)
L
lammps_hook() (nanover.lammps.LammpsImd.LammpsImd method)
LammpsImd (class in nanover.lammps.LammpsImd)
LammpsUnitConverter (class in nanover.lammps.conversions)
last_frame (nanover.trajectory.frame_publisher.FramePublisher attribute)
last_frame_index (nanover.trajectory.frame_publisher.FramePublisher attribute)
last_request_id (nanover.trajectory.frame_publisher.FramePublisher attribute)
latest_frame (nanover.app.client.NanoverImdClient property)
latest_multiplayer_values (nanover.app.client.NanoverImdClient property)
list() (nanover.ase.openmm.runner.ASEOpenMMRunner method)
(nanover.omni.omni.OmniRunner method)
(nanover.openmm.runner.OpenMMRunner method)
list_value_to_list() (in module nanover.utilities.protobuf_utilities)
load() (nanover.ase.openmm.runner.ASEOpenMMRunner method)
(nanover.omni.ase_omm.ASEOpenMMSimulation method)
(nanover.omni.omni.OmniRunner method)
(nanover.omni.omni.Simulation method)
(nanover.omni.openmm.OpenMMSimulation method)
(nanover.omni.playback.PlaybackSimulation method)
(nanover.openmm.runner.OpenMMRunner method)
lock (nanover.utilities.request_queues.DictOfQueues attribute)
lock_content() (nanover.state.state_dictionary.StateDictionary method)
lock_key() (nanover.utilities.key_lockable_map.KeyLockableMap method)
lock_state() (nanover.core.nanover_client.NanoverClient method)
(nanover.core.nanover_server.NanoverServer method)
(nanover.state.state_service.StateService method)
locks_update_to_acquire_release() (in module nanover.state.state_service)
log_addresses() (nanover.essd.server.DiscoveryServer method)
LoggingParams (class in nanover.ase.openmm.runner)
M
main() (in module nanover.ase.openmm.cli)
(in module nanover.essd.list_cli)
(in module nanover.omni.cli)
(in module nanover.openmm.cli)
make_quiet() (nanover.openmm.runner.OpenMMRunner method)
make_regular_frame() (nanover.omni.openmm.OpenMMSimulation method)
(nanover.openmm.imd.NanoverImdReporter method)
make_topology_frame() (nanover.omni.openmm.OpenMMSimulation method)
(nanover.openmm.imd.NanoverImdReporter method)
make_verbose() (nanover.openmm.runner.OpenMMRunner method)
mass_weighted (nanover.imd.particle_interaction.ParticleInteraction property)
MASS_WEIGHTED_KEY (nanover.imd.particle_interaction.ParticleInteraction attribute)
max_force (nanover.imd.particle_interaction.ParticleInteraction property)
MAX_FORCE_KEY (nanover.imd.particle_interaction.ParticleInteraction attribute)
mda_to_pdb_str() (in module nanover.nglview.nglclient)
mdanalysis_to_frame_data() (in module nanover.mdanalysis.converter)
message (nanover.essd.servicehub.ServiceHub property)
MissingDataError
MockLammps (class in nanover.lammps.mock)
modify() (nanover.app.selection.RenderingSelection method)
module
nanover
nanover.app
nanover.app.app_server
nanover.app.client
nanover.app.frame_app
nanover.app.imd_app
nanover.app.multiuser
nanover.app.runner
nanover.app.selection
nanover.ase
nanover.ase.converter
nanover.ase.frame_adaptor
nanover.ase.imd
nanover.ase.imd_calculator
nanover.ase.null_calculator
nanover.ase.openmm
nanover.ase.openmm.calculator
nanover.ase.openmm.cli
nanover.ase.openmm.runner
nanover.ase.trajectory_logger
nanover.ase.wall_constraint
nanover.command
nanover.command.command_info
nanover.command.command_service
nanover.core
nanover.core.grpc_client
nanover.core.grpc_server
nanover.core.nanover_client
nanover.core.nanover_server
nanover.essd
nanover.essd.client
nanover.essd.list_cli
nanover.essd.server
nanover.essd.servicehub
nanover.essd.utils
nanover.imd
nanover.imd.imd_client
nanover.imd.imd_force
nanover.imd.imd_server
nanover.imd.imd_state
nanover.imd.particle_interaction
nanover.lammps
nanover.lammps.conversions
nanover.lammps.LammpsImd
nanover.lammps.mock
nanover.mdanalysis
nanover.mdanalysis.converter
nanover.mdanalysis.universe
nanover.nglview
nanover.nglview.nglclient
nanover.omni
nanover.omni.ase_omm
nanover.omni.cli
nanover.omni.omni
nanover.omni.openmm
nanover.omni.playback
nanover.omni.record
nanover.openmm
nanover.openmm.cli
nanover.openmm.converter
nanover.openmm.imd
nanover.openmm.nanoverreporter
nanover.openmm.potentials
nanover.openmm.runner
nanover.openmm.serializer
nanover.protocol
nanover.protocol.array_pb2
nanover.protocol.array_pb2_grpc
nanover.protocol.command
nanover.protocol.command.command_service_pb2
nanover.protocol.command.command_service_pb2_grpc
nanover.protocol.state
nanover.protocol.state.state_service_pb2
nanover.protocol.state.state_service_pb2_grpc
nanover.protocol.trajectory
nanover.protocol.trajectory.frame_pb2
nanover.protocol.trajectory.frame_pb2_grpc
nanover.protocol.trajectory.get_frame_pb2
nanover.protocol.trajectory.get_frame_pb2_grpc
nanover.protocol.trajectory.trajectory_service_pb2
nanover.protocol.trajectory.trajectory_service_pb2_grpc
nanover.recording
nanover.recording.reading
nanover.recording.writing
nanover.state
nanover.state.state_dictionary
nanover.state.state_service
nanover.testing
nanover.testing.asserts
nanover.trajectory
nanover.trajectory.frame_client
nanover.trajectory.frame_data
nanover.trajectory.frame_publisher
nanover.trajectory.frame_server
nanover.utilities
nanover.utilities.change_buffers
nanover.utilities.event
nanover.utilities.grpc_utilities
nanover.utilities.key_lockable_map
nanover.utilities.protobuf_utilities
nanover.utilities.request_queues
nanover.utilities.timing
N
name (nanover.app.app_server.NanoverApplicationServer property)
(nanover.app.runner.NanoverRunner property)
(nanover.ase.openmm.runner.ImdParams attribute)
(nanover.command.command_info.CommandInfo property)
(nanover.essd.servicehub.ServiceHub property)
(nanover.omni.omni.Simulation attribute)
nanover
module
nanover.app
module
nanover.app.app_server
module
nanover.app.client
module
nanover.app.frame_app
module
nanover.app.imd_app
module
nanover.app.multiuser
module
nanover.app.runner
module
nanover.app.selection
module
nanover.ase
module
nanover.ase.converter
module
nanover.ase.frame_adaptor
module
nanover.ase.imd
module
nanover.ase.imd_calculator
module
nanover.ase.null_calculator
module
nanover.ase.openmm
module
nanover.ase.openmm.calculator
module
nanover.ase.openmm.cli
module
nanover.ase.openmm.runner
module
nanover.ase.trajectory_logger
module
nanover.ase.wall_constraint
module
nanover.command
module
nanover.command.command_info
module
nanover.command.command_service
module
nanover.core
module
nanover.core.grpc_client
module
nanover.core.grpc_server
module
nanover.core.nanover_client
module
nanover.core.nanover_server
module
nanover.essd
module
nanover.essd.client
module
nanover.essd.list_cli
module
nanover.essd.server
module
nanover.essd.servicehub
module
nanover.essd.utils
module
nanover.imd
module
nanover.imd.imd_client
module
nanover.imd.imd_force
module
nanover.imd.imd_server
module
nanover.imd.imd_state
module
nanover.imd.particle_interaction
module
nanover.lammps
module
nanover.lammps.conversions
module
nanover.lammps.LammpsImd
module
nanover.lammps.mock
module
nanover.mdanalysis
module
nanover.mdanalysis.converter
module
nanover.mdanalysis.universe
module
nanover.nglview
module
nanover.nglview.nglclient
module
nanover.omni
module
nanover.omni.ase_omm
module
nanover.omni.cli
module
nanover.omni.omni
module
nanover.omni.openmm
module
nanover.omni.playback
module
nanover.omni.record
module
nanover.openmm
module
nanover.openmm.cli
module
nanover.openmm.converter
module
nanover.openmm.imd
module
nanover.openmm.nanoverreporter
module
nanover.openmm.potentials
module
nanover.openmm.runner
module
nanover.openmm.serializer
module
nanover.protocol
module
nanover.protocol.array_pb2
module
nanover.protocol.array_pb2_grpc
module
nanover.protocol.command
module
nanover.protocol.command.command_service_pb2
module
nanover.protocol.command.command_service_pb2_grpc
module
nanover.protocol.state
module
nanover.protocol.state.state_service_pb2
module
nanover.protocol.state.state_service_pb2_grpc
module
nanover.protocol.trajectory
module
nanover.protocol.trajectory.frame_pb2
module
nanover.protocol.trajectory.frame_pb2_grpc
module
nanover.protocol.trajectory.get_frame_pb2
module
nanover.protocol.trajectory.get_frame_pb2_grpc
module
nanover.protocol.trajectory.trajectory_service_pb2
module
nanover.protocol.trajectory.trajectory_service_pb2_grpc
module
nanover.recording
module
nanover.recording.reading
module
nanover.recording.writing
module
nanover.state
module
nanover.state.state_dictionary
module
nanover.state.state_service
module
nanover.testing
module
nanover.testing.asserts
module
nanover.trajectory
module
nanover.trajectory.frame_client
module
nanover.trajectory.frame_data
module
nanover.trajectory.frame_publisher
module
nanover.trajectory.frame_server
module
nanover.utilities
module
nanover.utilities.change_buffers
module
nanover.utilities.event
module
nanover.utilities.grpc_utilities
module
nanover.utilities.key_lockable_map
module
nanover.utilities.protobuf_utilities
module
nanover.utilities.request_queues
module
nanover.utilities.timing
module
NanoverApplicationServer (class in nanover.app.app_server)
NanoverASEDynamics (class in nanover.ase.imd)
NanoverClient (class in nanover.core.nanover_client)
NanoverFrameApplication (class in nanover.app.frame_app)
NanoverImdApplication (class in nanover.app.imd_app)
NanoverImdClient (class in nanover.app.client)
NanoverImdReporter (class in nanover.openmm.imd)
NanoverParser (class in nanover.mdanalysis.universe)
NanoverReader (class in nanover.mdanalysis.universe)
NanoverReporter (class in nanover.openmm.nanoverreporter)
NanoverRunner (class in nanover.app.runner)
NanoverServer (class in nanover.core.nanover_server)
NanoverStubClient (class in nanover.core.nanover_client)
need_frames() (in module nanover.app.client)
need_imd() (in module nanover.app.client)
need_multiplayer() (in module nanover.app.client)
need_to_collect_topology (nanover.lammps.LammpsImd.LammpsImd attribute)
need_trajectory_joined() (in module nanover.app.client)
next() (nanover.ase.openmm.runner.ASEOpenMMRunner method)
(nanover.omni.omni.OmniRunner method)
(nanover.openmm.runner.OpenMMRunner method)
NextReport (class in nanover.openmm.imd)
NGLClient (class in nanover.nglview.nglclient)
nullable_int() (in module nanover.mdanalysis.converter)
NullCalculator (class in nanover.ase.null_calculator)
O
object_to_value() (in module nanover.utilities.protobuf_utilities)
ObjectFrozenError
OmniRunner (class in nanover.omni.omni)
on_reset_listeners (nanover.ase.imd.NanoverASEDynamics attribute)
one_queue() (nanover.utilities.request_queues.DictOfQueues method)
openmm_ase_frame_adaptor() (in module nanover.ase.openmm.runner)
openmm_to_frame_data() (in module nanover.openmm.converter)
OpenMMCalculator (class in nanover.ase.openmm.calculator)
OpenMMRunner (class in nanover.openmm.runner)
OpenMMSimulation (class in nanover.omni.openmm)
P
parallel (nanover.ase.trajectory_logger.TrajectoryLogger attribute)
parse() (nanover.mdanalysis.universe.NanoverParser method)
Parseable (class in nanover.recording.reading)
ParseFromString() (nanover.recording.reading.Parseable method)
particle_count (nanover.trajectory.frame_data.FrameData property)
particle_elements (nanover.trajectory.frame_data.FrameData property)
particle_forces (nanover.trajectory.frame_data.FrameData property)
particle_forces_system (nanover.trajectory.frame_data.FrameData property)
particle_names (nanover.trajectory.frame_data.FrameData property)
particle_positions (nanover.trajectory.frame_data.FrameData property)
particle_residues (nanover.trajectory.frame_data.FrameData property)
particle_velocities (nanover.trajectory.frame_data.FrameData property)
ParticleInteraction (class in nanover.imd.particle_interaction)
particles (nanover.imd.particle_interaction.ParticleInteraction property)
pause() (nanover.app.runner.NanoverRunner method)
(nanover.ase.imd.NanoverASEDynamics method)
(nanover.ase.openmm.runner.ASEOpenMMRunner method)
(nanover.omni.omni.OmniRunner method)
(nanover.openmm.runner.OpenMMRunner method)
platform (nanover.ase.openmm.runner.ImdParams attribute)
play() (nanover.app.runner.NanoverRunner method)
(nanover.ase.imd.NanoverASEDynamics method)
(nanover.ase.openmm.runner.ASEOpenMMRunner method)
(nanover.omni.omni.OmniRunner method)
(nanover.openmm.runner.OpenMMRunner method)
play_step_interval (nanover.omni.omni.InternalRunner property)
PlaybackSimulation (class in nanover.omni.playback)
player_can_lock_key() (nanover.utilities.key_lockable_map.KeyLockableMap method)
populate_imd_force() (in module nanover.openmm.imd)
port (nanover.app.app_server.NanoverApplicationServer property)
(nanover.app.runner.NanoverRunner property)
(nanover.ase.imd.NanoverASEDynamics property)
(nanover.ase.openmm.runner.ImdParams attribute)
(nanover.core.grpc_server.GrpcServer property)
(nanover.essd.client.DiscoveryClient property)
position (nanover.imd.particle_interaction.ParticleInteraction property)
positions (nanover.lammps.conversions.LammpsUnitConverter attribute)
(nanover.omni.ase_omm.InitialState attribute)
potential_energy (nanover.trajectory.frame_data.FrameData property)
print_basic_info_and_wait() (nanover.omni.omni.OmniRunner method)
print_hub() (in module nanover.essd.list_cli)
properties (nanover.imd.particle_interaction.ParticleInteraction property)
put() (nanover.utilities.request_queues.GetFrameResponseAggregatingQueue method)
(nanover.utilities.request_queues.SingleItemQueue method)
Q
qualified_server_name() (in module nanover.app.app_server)
queue_max_size (nanover.utilities.request_queues.DictOfQueues attribute)
queues (nanover.utilities.request_queues.DictOfQueues attribute)
R
raw (nanover.trajectory.frame_data.FrameData property)
read() (in module nanover.recording.reading)
read_from_dictionary() (nanover.app.selection.RenderingSelection method)
read_hide_from_dictionary() (nanover.app.selection.RenderingSelection method)
read_interaction_method_from_dictionary() (nanover.app.selection.RenderingSelection method)
read_renderer_from_dictionary() (nanover.app.selection.RenderingSelection method)
read_selected_particles_from_dictionary() (nanover.app.selection.RenderingSelection method)
read_u128() (in module nanover.recording.reading)
read_u64() (in module nanover.recording.reading)
read_velocity_reset_from_dictionary() (nanover.app.selection.RenderingSelection method)
record_entries() (in module nanover.recording.writing)
record_from_server() (in module nanover.omni.record)
record_messages() (in module nanover.recording.writing)
record_messages_to_file() (in module nanover.recording.writing)
record_name (nanover.trajectory.frame_data.ArraysView attribute)
(nanover.trajectory.frame_data.RecordView attribute)
(nanover.trajectory.frame_data.ValuesView attribute)
record_state() (in module nanover.omni.record)
record_trajectory() (in module nanover.omni.record)
RecordView (class in nanover.trajectory.frame_data)
register_command() (nanover.command.command_service.CommandService method)
(nanover.core.nanover_server.NanoverServer method)
register_service() (nanover.essd.server.DiscoveryServer method)
release_key() (nanover.utilities.key_lockable_map.KeyLockableMap method)
removals (nanover.utilities.change_buffers.DictionaryChange attribute)
remove() (nanover.app.selection.RenderingSelection method)
remove_callback() (nanover.utilities.event.Event method)
remove_interaction() (nanover.imd.imd_state.ImdStateWrapper method)
remove_owner() (nanover.utilities.key_lockable_map.KeyLockableMap method)
remove_selection() (nanover.app.client.NanoverImdClient method)
remove_shared_value() (nanover.app.client.NanoverImdClient method)
remove_view() (nanover.utilities.change_buffers.DictionaryChangeMultiView method)
removed (nanover.app.selection.RenderingSelection property)
renderer (nanover.app.selection.RenderingSelection property)
RenderingSelection (class in nanover.app.selection)
replace_dynamics() (nanover.ase.imd.NanoverASEDynamics method)
report() (nanover.openmm.imd.NanoverImdReporter method)
(nanover.openmm.nanoverreporter.NanoverReporter method)
reporter (nanover.openmm.runner.OpenMMRunner property)
(nanover.openmm.runner.SimulationEntry attribute)
required (nanover.mdanalysis.converter.FrameDataField attribute)
reset() (nanover.app.runner.NanoverRunner method)
(nanover.ase.imd.NanoverASEDynamics method)
(nanover.ase.openmm.runner.ASEOpenMMRunner method)
(nanover.ase.trajectory_logger.TrajectoryLogger method)
(nanover.omni.ase_omm.ASEOpenMMSimulation method)
(nanover.omni.omni.OmniRunner method)
(nanover.omni.omni.Simulation method)
(nanover.omni.openmm.OpenMMSimulation method)
(nanover.omni.playback.PlaybackSimulation method)
(nanover.openmm.runner.OpenMMRunner method)
(nanover.openmm.runner.SimulationEntry method)
reset_temperature (nanover.ase.imd_calculator.ImdCalculator property)
reset_velocities (nanover.imd.particle_interaction.ParticleInteraction property)
RESET_VELOCITIES_KEY (nanover.imd.particle_interaction.ParticleInteraction attribute)
residue_chains (nanover.trajectory.frame_data.FrameData property)
residue_count (nanover.trajectory.frame_data.FrameData property)
residue_ids (nanover.trajectory.frame_data.FrameData property)
residue_names (nanover.trajectory.frame_data.FrameData property)
resolve_host_broadcast_address() (in module nanover.essd.utils)
ResourceLockedError
restrain_particles() (in module nanover.openmm.potentials)
restraint_force() (in module nanover.openmm.potentials)
root_selection (nanover.app.client.NanoverImdClient property)
RpcAlreadyTerminatedError
run() (nanover.app.runner.NanoverRunner method)
(nanover.ase.imd.NanoverASEDynamics method)
(nanover.ase.openmm.runner.ASEOpenMMRunner method)
(nanover.omni.omni.InternalRunner method)
(nanover.openmm.runner.OpenMMRunner method)
run_command() (nanover.app.client.NanoverImdClient method)
(nanover.core.nanover_client.NanoverClient method)
run_imd_command() (nanover.app.client.NanoverImdClient method)
run_list() (nanover.app.client.NanoverImdClient method)
run_load() (nanover.app.client.NanoverImdClient method)
run_multiplayer_command() (nanover.app.client.NanoverImdClient method)
run_next() (nanover.app.client.NanoverImdClient method)
run_pause() (nanover.app.client.NanoverImdClient method)
run_play() (nanover.app.client.NanoverImdClient method)
run_reset() (nanover.app.client.NanoverImdClient method)
run_step() (nanover.app.client.NanoverImdClient method)
run_trajectory_command() (nanover.app.client.NanoverImdClient method)
RunCommand() (nanover.command.command_service.CommandService method)
(nanover.protocol.command.command_service_pb2_grpc.Command static method)
(nanover.protocol.command.command_service_pb2_grpc.CommandServicer method)
runner (nanover.omni.omni.OmniRunner property)
running_discovery (nanover.app.app_server.NanoverApplicationServer property)
(nanover.ase.openmm.runner.ASEOpenMMRunner property)
S
scale (nanover.imd.particle_interaction.ParticleInteraction property)
SCALE_KEY (nanover.imd.particle_interaction.ParticleInteraction attribute)
scatter_atoms() (nanover.lammps.mock.MockLammps method)
search_for_services() (nanover.essd.client.DiscoveryClient method)
selected_particle_ids (nanover.app.selection.RenderingSelection property)
selection_id (nanover.app.selection.RenderingSelection property)
selection_name (nanover.app.selection.RenderingSelection property)
selections (nanover.app.client.NanoverImdClient property)
send_ase_frame() (in module nanover.ase.frame_adaptor)
send_frame() (nanover.trajectory.frame_publisher.FramePublisher method)
(nanover.trajectory.frame_server.FrameServer method)
Serializable (class in nanover.recording.writing)
serialize_simulation() (in module nanover.openmm.serializer)
SerializeToString() (nanover.recording.writing.Serializable method)
server (nanover.app.app_server.NanoverApplicationServer property)
server_timestamp (nanover.trajectory.frame_data.FrameData property)
ServiceHub (class in nanover.essd.servicehub)
services (nanover.essd.server.DiscoveryServer attribute)
(nanover.essd.servicehub.ServiceHub property)
set() (nanover.trajectory.frame_data.ArraysView method)
(nanover.trajectory.frame_data.RecordView method)
(nanover.trajectory.frame_data.ValuesView method)
(nanover.utilities.key_lockable_map.KeyLockableMap method)
set_float_array() (nanover.trajectory.frame_data.FrameData method)
set_index_array() (nanover.trajectory.frame_data.FrameData method)
set_no_replace() (nanover.utilities.key_lockable_map.KeyLockableMap method)
set_particles() (nanover.app.selection.RenderingSelection method)
set_periodic_bounds() (nanover.ase.openmm.calculator.OpenMMCalculator static method)
set_shared_value() (nanover.app.client.NanoverImdClient method)
set_string_array() (nanover.trajectory.frame_data.FrameData method)
setup_services() (nanover.core.grpc_server.GrpcServer method)
(nanover.core.nanover_server.NanoverServer method)
(nanover.trajectory.frame_server.FrameServer method)
shortcuts (nanover.trajectory.frame_data.FrameData property)
Simulation (class in nanover.omni.omni)
simulation (nanover.ase.openmm.calculator.OpenMMCalculator attribute)
(nanover.omni.omni.OmniRunner property)
(nanover.openmm.runner.OpenMMRunner property)
simulation_counter (nanover.trajectory.frame_data.FrameData property)
simulation_entry (nanover.openmm.runner.OpenMMRunner property)
simulation_time (nanover.trajectory.frame_data.FrameData property)
SimulationEntry (class in nanover.openmm.runner)
SingleItemQueue (class in nanover.utilities.request_queues)
singular (nanover.trajectory.frame_data.ArraysView attribute)
(nanover.trajectory.frame_data.RecordView attribute)
(nanover.trajectory.frame_data.ValuesView attribute)
start() (nanover.essd.server.DiscoveryServer method)
start_default_server_and_discovery() (in module nanover.app.app_server)
start_interaction() (nanover.app.client.NanoverImdClient method)
(nanover.imd.imd_client.ImdClient method)
State (class in nanover.protocol.state.state_service_pb2_grpc)
state_dictionary (nanover.state.state_service.StateService attribute)
state_update_to_dictionary_change() (in module nanover.state.state_service)
StateDictionary (class in nanover.state.state_dictionary)
StateService (class in nanover.state.state_service)
StateServicer (class in nanover.protocol.state.state_service_pb2_grpc)
StateStub (class in nanover.protocol.state.state_service_pb2_grpc)
StateUpdate (class in nanover.protocol.state.state_service_pb2)
step() (nanover.app.runner.NanoverRunner method)
(nanover.ase.imd.NanoverASEDynamics method)
(nanover.ase.openmm.runner.ASEOpenMMRunner method)
(nanover.omni.omni.OmniRunner method)
(nanover.openmm.runner.OpenMMRunner method)
steps (nanover.openmm.imd.NextReport attribute)
stop_all_interactions() (nanover.imd.imd_client.ImdClient method)
stop_interaction() (nanover.app.client.NanoverImdClient method)
(nanover.imd.imd_client.ImdClient method)
StringArray (class in nanover.protocol.array_pb2)
struct_to_dict() (in module nanover.utilities.protobuf_utilities)
subscribe_all_state_updates() (nanover.core.nanover_client.NanoverClient method)
subscribe_changes() (nanover.utilities.change_buffers.DictionaryChangeBuffer method)
(nanover.utilities.change_buffers.DictionaryChangeMultiView method)
subscribe_channel_connectivity_change() (in module nanover.utilities.grpc_utilities)
subscribe_frames_async() (nanover.trajectory.frame_client.FrameClient method)
subscribe_frames_blocking() (nanover.trajectory.frame_client.FrameClient method)
subscribe_frames_iterate() (nanover.trajectory.frame_client.FrameClient method)
subscribe_last_frames_async() (nanover.trajectory.frame_client.FrameClient method)
subscribe_last_frames_blocking() (nanover.trajectory.frame_client.FrameClient method)
subscribe_multiplayer() (nanover.app.client.NanoverImdClient method)
subscribe_rpc_termination() (in module nanover.utilities.grpc_utilities)
subscribe_to_all_frames() (nanover.app.client.NanoverImdClient method)
subscribe_to_frames() (nanover.app.client.NanoverImdClient method)
SubscribeFrames() (nanover.protocol.trajectory.trajectory_service_pb2_grpc.TrajectoryService static method)
(nanover.protocol.trajectory.trajectory_service_pb2_grpc.TrajectoryServiceServicer method)
(nanover.trajectory.frame_publisher.FramePublisher method)
SubscribeLatestFrames() (nanover.protocol.trajectory.trajectory_service_pb2_grpc.TrajectoryService static method)
(nanover.protocol.trajectory.trajectory_service_pb2_grpc.TrajectoryServiceServicer method)
(nanover.trajectory.frame_publisher.FramePublisher method)
SubscribeStateUpdates() (nanover.protocol.state.state_service_pb2_grpc.State static method)
(nanover.protocol.state.state_service_pb2_grpc.StateServicer method)
(nanover.state.state_service.StateService method)
SubscribeStateUpdatesRequest (class in nanover.protocol.state.state_service_pb2)
SupportsClose (class in nanover.app.app_server)
T
temperature (nanover.ase.imd_calculator.ImdCalculator property)
threads (nanover.core.grpc_client.GrpcClient attribute)
time_step (nanover.ase.openmm.runner.ASEOpenMMRunner property)
(nanover.ase.openmm.runner.ImdParams attribute)
timestamping (nanover.ase.trajectory_logger.TrajectoryLogger property)
to_dictionary() (nanover.app.selection.RenderingSelection method)
to_message() (nanover.essd.servicehub.ServiceHub method)
topology (nanover.ase.openmm.calculator.OpenMMCalculator property)
trajectory_file (nanover.ase.openmm.runner.LoggingParams attribute)
trajectory_path (nanover.ase.openmm.runner.TrajectoryLoggerInfo property)
TrajectoryLogger (class in nanover.ase.trajectory_logger)
TrajectoryLoggerInfo (class in nanover.ase.openmm.runner)
TrajectoryService (class in nanover.protocol.trajectory.trajectory_service_pb2_grpc)
TrajectoryServiceServicer (class in nanover.protocol.trajectory.trajectory_service_pb2_grpc)
TrajectoryServiceStub (class in nanover.protocol.trajectory.trajectory_service_pb2_grpc)
type (nanover.lammps.conversions.LammpsUnitConverter attribute)
TYPE_KEY (nanover.imd.particle_interaction.ParticleInteraction attribute)
U
units (nanover.mdanalysis.universe.NanoverReader attribute)
unregister_command() (nanover.command.command_service.CommandService method)
(nanover.core.nanover_server.NanoverServer method)
unregister_service() (nanover.essd.server.DiscoveryServer method)
UnsupportedFormatError
UnsupportedFormatVersion
update() (nanover.utilities.change_buffers.DictionaryChangeBuffer method)
(nanover.utilities.change_buffers.DictionaryChangeMultiView method)
update_available_commands() (nanover.app.client.NanoverImdClient method)
(nanover.core.nanover_client.NanoverClient method)
update_interaction() (nanover.app.client.NanoverImdClient method)
(nanover.imd.imd_client.ImdClient method)
update_interactions() (nanover.openmm.imd.ImdForceManager method)
update_locks() (nanover.core.nanover_server.NanoverServer method)
(nanover.state.state_dictionary.StateDictionary method)
(nanover.state.state_service.StateService method)
update_selection() (nanover.app.client.NanoverImdClient method)
update_state() (nanover.core.nanover_server.NanoverServer method)
(nanover.state.state_dictionary.StateDictionary method)
(nanover.state.state_service.StateService method)
updated (nanover.app.selection.RenderingSelection property)
UpdateLocks() (nanover.protocol.state.state_service_pb2_grpc.State static method)
(nanover.protocol.state.state_service_pb2_grpc.StateServicer method)
(nanover.state.state_service.StateService method)
UpdateLocksRequest (class in nanover.protocol.state.state_service_pb2)
UpdateLocksResponse (class in nanover.protocol.state.state_service_pb2)
updates (nanover.utilities.change_buffers.DictionaryChange attribute)
UpdateState() (nanover.protocol.state.state_service_pb2_grpc.State static method)
(nanover.protocol.state.state_service_pb2_grpc.StateServicer method)
(nanover.state.state_service.StateService method)
UpdateStateRequest (class in nanover.protocol.state.state_service_pb2)
UpdateStateResponse (class in nanover.protocol.state.state_service_pb2)
used_shortcuts (nanover.trajectory.frame_data.FrameData property)
user_energy (nanover.trajectory.frame_data.FrameData property)
user_forces_index (nanover.trajectory.frame_data.FrameData property)
user_forces_sparse (nanover.trajectory.frame_data.FrameData property)
V
validate_ase_can_append_filename() (in module nanover.ase.trajectory_logger)
validate_ase_can_append_format() (in module nanover.ase.trajectory_logger)
validate_dict_is_serializable() (in module nanover.state.state_service)
value_keys (nanover.trajectory.frame_data.FrameData property)
value_to_object() (in module nanover.utilities.protobuf_utilities)
ValueArray (class in nanover.protocol.array_pb2)
ValuesView (class in nanover.trajectory.frame_data)
VariableIntervalGenerator (class in nanover.utilities.timing)
velocities (nanover.omni.ase_omm.InitialState attribute)
velocity_reset (nanover.app.selection.RenderingSelection property)
velocity_reset_available (nanover.imd.imd_state.ImdStateWrapper property)
VelocityWallConstraint (class in nanover.ase.wall_constraint)
verbose (nanover.ase.openmm.runner.ASEOpenMMRunner property)
(nanover.ase.openmm.runner.ImdParams attribute)
(nanover.openmm.runner.OpenMMRunner property)
verbosity_interval (nanover.openmm.runner.OpenMMRunner property)
version (nanover.essd.servicehub.ServiceHub property)
view (nanover.nglview.nglclient.NGLClient property)
W
wait_busy() (in module nanover.utilities.timing)
wait_mixed() (in module nanover.utilities.timing)
wait_until_first_frame() (nanover.app.client.NanoverImdClient method)
walls (nanover.ase.openmm.runner.ImdParams attribute)
with_basic_server() (nanover.omni.omni.OmniRunner class method)
wrap_pbc() (in module nanover.imd.imd_force)
wrap_positions (nanover.openmm.imd.NextReport attribute)
write() (nanover.ase.trajectory_logger.TrajectoryLogger method)
write_entry() (in module nanover.recording.writing)
write_header() (in module nanover.recording.writing)
write_interval (nanover.ase.openmm.runner.LoggingParams attribute)
(nanover.ase.openmm.runner.TrajectoryLoggerInfo property)
write_u128() (in module nanover.recording.writing)
write_u64() (in module nanover.recording.writing)
Y
yield_interval() (in module nanover.utilities.timing)
(nanover.utilities.timing.VariableIntervalGenerator method)